Publications


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Presentations

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Journal Publications

2017

2016

2015

2014

  • Mirzaee H, Shuey L, Schenk PM (2014) Transcriptomics of plants interacting with pathogens and beneficial microbes. IN: Genomics, Proteomics and Metabolomics in Nutraceuticals and Functional Foods, D. Bagchi (ed). 2nd ed., Wiley-Interscience.
  • Crawford MH, Rincon-Florez V, Balzer A, Dang VP, Carvalhais LC, Liu H, Schenk PM (2014) Changes in the soil quality attributes of continuous no-till farming systems following a strategic tillage. Soil Research.
  • Gao Z , Meng C, Chen YC, Ahmed F, Mangott A, Schenk PM, Li Y (2014) Comparison of astaxanthin accumulation and biosynthesis gene expression of three Haematococcus pluvialis strains upon salinity stress. Journal of Applied Phycology DOI: 10.1007/s10811-014-0491-3.
  • Ghasemi Naghdi F, Thomas-Hall SR, Durairatnam R, Pratt S, Schenk PM (2014) Comparative effects of biomass pre-treatments for direct and indirect transesterification to enhance microalgal lipid recovery. Frontiers in Energy Research 2: 57.
  • Lim DKY, Schuhmann H, Sharma K, Schenk PM (2014) Isolation of high-lipid Tetraselmis suecica strains following repeated UV-C mutagenesis, FACS and high-throughput growth selection. Bioenergy Research DOI: 10.1007/s12155-014-9553-2.
  • Chen YC, Kidd BN, Carvalhais LC, Schenk PM (2014) Molecular defense responses in roots and the rhizosphere against Fusarium oxysporum. Plant Signaling & Behavior .
  • Carvalhais LC, Dennis P, Schenk PM (2014) Plant defence inducers rapidly influence the diversity of bacterial communities in a potting mix. Applied Soil Ecology 84, 1-5.
  • Yi Chung Chen YC, Wong CL, Muzzi F, Vlaardingerbroek I, Kidd BN, Schenk PM (2014) Root defense analyses against Fusarium oxysporum reveals new regulators to confer resistance. Scientific Reports 4, 5584.
  • Ahmed F, Fanning K, Netzel M, Turner W, Li Y, Schenk PM (2014) Profiling of carotenoids and antioxidant capacity of microalgae from subtropical coastal and brackish waters. Food Chemistry 165, 300–306.
  • Adarme-Vega TC, Thomas-Hall SR, Lim DKY, Schenk PM (2014) Effect of salinity on long chain fatty acids synthesis and associated gene expression in Tetraselmis sp. Marine Drugs 12, 3381-3398.
  • Sharma K, Li Y, Schenk PM (2014) UV-C-mediated lipid induction and settling, a step change towards economical microalgal biodiesel production. Green Chemistry 16, 3539–3548.
  • Tilbrook K, Poirier Y, Gebbie L, Schenk PM, McQualter RB, Brumbley SM (2014) Reduced peroxisomal citrate synthase activity increases substrate availability for polyhydroxyalkanoate biosynthesis in plant peroxisomes. Plant Biotechnology Journal DOI: 10.1111/pbi.12211.
  • Garg S, Wang L, Schenk PM (2014) Effective harvesting of low surface-hydrophobicity microalgae by froth flotation. Bioresource Technology 159:437-441.
  • Singh J, Rani A, Kumar P, Baranwal VK, Saroj PL, Sirohi A, Pandey AN, Schenk PM (2014) New host record of a ‘Candidatus Phytoplasma asteris’-related strain infecting peach in India. Australasian Plant Disease Notes 9:1-4.
  • Li Y, Ghasemi F, Garg S, Adarme-Vega TC, Thurecht KJ, Ghafor WA, Tannock S, Schenk PM (2014) A comparative study: the impact of different lipid extraction methods on current microalgal lipid research. Microbial Cell Factories 13:14.
  • Adarme-Vega TC, Thomas-Hall SR, Schenk PM (2014) Towards sustainable sources for omega-3 fatty acids production. Current Opinion in Biotechnology 28:14-18.
  • Kidd B, Kazan K, Schenk PM (2014) Transcriptome analysis of induced resistance. IN: Induced Resistance for Plant Defense: A Sustainable Approach to Crop Protection, D. R. Walters, A. C. Newton & G. D. Lyon (eds). 2nd ed., Wiley & Sons.
  • Adarme-Vega TC, Thomas-Hall SR, Schenk PM (2014) Optimization of polyunsaturated fatty acid production from autotrophically-grown microalgae. IN: Industrial and Applied Microbiology: Microbes in Health and Environment, N. Garg & A. Aeroneelam (eds), Nova Science Publishers, Hauppauge, USA.
  • Narala RR, Schenk PM (2014) Cost-saving technology for large-scale algae cultivation, harvesting and biorefinery. IN: High-Efficiency Algal Biocrude, N. R. Moheimani, M. P. McHenry, K. de Boer & P. A. Bahri (eds), Springer, New York/Heidelberg.
  • Schenk PM (2014) Rapid cloning of genes and promoters for functional analyses. IN: Methods in Molecular Biology: Cereal Genomics. A. Furtado & R. Henry (eds), Springer, New York/Heidelberg.

2013

  • Sharma KK, Garg S, Li Y, Malekizadeh A, Schenk PM (2013) Critical analysis of current microalgae dewatering techniques. Biofuels (accepted 8 May 2013).
  • Li Y, Mangott A, Grierson S, Schenk PM (2013) Thinking outside of the box: potential of zooplankton for microalgae harvesting. Biofuels (accepted 8 February 2013).
  • Carvalhais LC, Dennis PG, Badri DV, Tyson GW, Vivanco JM, Schenk PM (2013) Activation of the jasmonic acid plant defence pathway alters the composition of rhizosphere bacterial communities. PLoS ONE 8:e56457. (IF 4.1)
  • Ahmed F, Fanning K, Schuhmann H, Netzel M, Schenk PM (2013) Microalgae: A valuable source of natural carotenoids with potential health benefits. IN: Carotenoids: food Sources, production and health benefits. M. Yamaguchi (ed), Nova Science Publishers, Hauppauge, USA.
  • Carvalhais L, Rincon V, Schenk PM (2013) Soil functional gene microarrays and applications in plant-microbe interactions IN: Microarrays: Current Technology, Innovations and Applications. Z. He (ed), Horizon Scientific Press.
  • Rincon-Florez VA, Carvalhais, LC, Schenk PM (2013) Culture-independent molecular tools for soil and rhizosphere microbiology. Diversity 5:581-612.
  • Sewelam N, Kazan K, Thomas-Hall SR, Kidd BN, Manners JM, Schenk PM (2013) Ethylene Response Factor 6 is a regulator of reactive oxygen species signaling in Arabidopsis. PLoS ONE 8:e70289.
  • Carvalhais LC, Muzzi F, Tan CH, Hsien-Choo J, Schenk PM (2013) Plant growth in Arabidopsis is assisted by compost-soil derived microbial communities. Frontiers in Plant Science 4:235.
  • Carvalhais LC, Schenk PM (2013) Sample processing and cDNA preparation for microbial metatranscriptomics in complex soil communities. Methods in Enzymology 531:251-267.
  • Sharma KK, Garg S, Li Y, Malekizadeh A, Schenk PM (2013) Critical analysis of current microalgae dewatering techniques. Biofuels 4:397-407.
  • Li Y, Mangott A, Grierson S, Schenk PM (2013) Thinking outside of the box: potential of zooplankton for microalgae harvesting. Biofuels 4:263-266.
  • Carvalhais LC, Dennis PG, Badri DV, Tyson GW, Vivanco JM, Schenk PM (2013) Activation of the jasmonic acid plant defence pathway alters the composition of rhizosphere bacterial communities. PLoS ONE 8:e56457.
  • Duong VT, Li Y, Nowak E, Schenk PM (2013) Microalgae isolation and selection for prospective biodiesel production. IN: Advances in Biofuel Production: Algae and Aquatic Plants. B. Gikonyo (ed), CRC Books, Taylor and Francis, London.
  • Carvalhais LC, Dennis PG, Tyson GW, Schenk PM (2013) Rhizosphere metatranscriptomics: challenges and opportunities. IN: Molecular Microbial Ecology of the Rhizosphere. F.J. de Bruijn (ed), Wiley-Blackwell, New Jersey.
  • Ahmed F, Fanning K, Schuhmann H, Netzel M, Schenk PM (2013) Microalgae: A valuable source of natural carotenoids with potential health benefits. IN: Carotenoids: Food Sources, Production and Health Benefits. M. Yamaguchi (ed), Nova Science Publishers, Hauppauge, USA.
  • Carvalhais L, Rincon V, Schenk PM (2013) Soil functional gene microarrays and applications in plant-microbe interactions IN: Microarrays: Current Technology, Innovations and Applications. Z. He (ed), Horizon Scientific Press.

2012

  • Carvalhais LC, Dennis PG, Tyson GW, Schenk PM (2012) Application of metatranscriptomics to soil environments. Journal of Microbiological Methods 91:246–251. (IF 2.0)
  • Çevik V, Kidd BN, Zhang P, Hill C, Kiddle S, Denby KJ, Holub EB, Cahill DM, Manners JM, Schenk PM, Beynon J, Kazan K (2012) MEDIATOR 25 acts as an integrative hub for the regulation of jasmonate-responsive gene expression in Arabidopsis. Plant Physiology 112.202697. (IF 6.5)
  • Adarme-Vega TC, Lim DKY, Timmins M, Vernen F, Li Y, Schenk PM (2012) Microalgal biofactories: A promising approach towards sustainable omega-3 fatty acid production. Microbial Cell Factories 11:96. (IF 3.6)
  • Garg S, Li Y, Wang L, Schenk PM (2012) Flotation for harvesting of marine microalgae: effect of algal hydrophobicity. Bioresource Technology 102:71-81. (IF 5.0)
  • Duong VT, Li Y, Nowak E, Schenk PM (2012) Microalgae isolation and selection for prospective biodiesel production. Energies 5:1835-1849. (IF 1.9)
  • Li Y, Moheimani NR, Schenk PM (2012) Current research and perspectives of microalgal biofuels in Australia. Biofuels 3:427-439.
  • Lim DKY, Garg S, Timmins M, Zhang ESB, Thomas-Hall SR, Schuhmann H, Li Y, Schenk PM (2012) Isolation and evaluation of oil-producing microalgae from subtropical coastal and brackish waters. PLoS ONE 7:e40751 (IF 4.1)
  • Sharma KK, Schuhmann H, Schenk PM (2012) High lipid induction in microalgae for biodiesel production. Energies 5:1532-1553. (IF 1.9)
  • Schuhmann H, Lim DKY, Schenk PM (2012) Perspectives on metabolic engineering for increased lipid contents in microalgae. Biofuels 3:71-86.
  • Rahaie M, Xue GP, Schenk PM (2012) The role of transcription factors in wheat under different abiotic stresses. IN: Abiotic Stress. K. Vahdati & C. Leslie (eds), InTech, Rijeka.
  • Schuhmann H & Schenk PM (2012) Physiology, biochemistry and genetics of algal growth and lipid production. IN: Biofuel Crops. B.P. Singh (ed), CABI, Cambridge, USA.
  • Schenk PM & Carvalhais L (2012) Simultaneous gene expression analysis of plants and associated microorganisms. IN: Research Advances in Applied & Environmental Microbiology. R.M. Mohan (ed), Global Research Network, Kerala.
  • Ahmed F, Li Y, Schenk PM (2012) Algal biorefinery: Sustainable production of biofuels and aquaculture feed. IN: The Science of Algal Fuels: Phycology, Geology, Biophotonics, Genomics and Nanotechnology. R. Gordon & J. Seckbach (eds), Springer, Dordrecht.
  • Carvalhais LC, Dennis PG, Tyson GW, Schenk PM (2012) Rhizosphere metatranscriptomics: challenges and opportunities. IN: Molecular Microbial Ecology of the Rhizosphere. F.J. Bruijn (ed), Wiley-Blackwell, New Jersey.
  • Chi DHL & Schenk PM (2012) Proteomics and metabolomics of Musa. IN: Genetics, Genomics, and Breeding of Bananas. M. Pillay, C. Kole, G. Ude (eds), Science Publishers, New Hampshire.

2011

2010

Before 2010